Mihalič, F., Arcila, D., Pettersson, M. E., Farkhondehkish, P., Andersson, E., Andersson, L., Betancur-R, R., & Jemth, P. (2024). Conservation of affinity rather than sequence underlies a dynamic evolution of the motif-mediated p53/MDM2 interaction in ray-finned fishes. Molecular Biology and Evolution, msae018. https://doi.org/10.1093/molbev/msae018

Narváez-Barandica, J. C., Quintero-Galvis, J. F., Aguirre-Pabón, J. C., Castro, L. R., Betancur, R., & Acero Pizarro, A. (2023). A Comparative Phylogeography of Three Marine Species with Different PLD Modes Reveals Two Genetic Breaks across the Southern Caribbean Sea. Animals, 13(15), 2528. https://doi.org/10.3390/ani13152528

Berbel-Filho, W. M., Pirro, S., Thompson, A. W., Lima, S. M. Q., Consuegra, S., & Betancur, R. (2023). The Complete Genome Sequences of three species from the killifish genus Kryptolebias (Rivulidae, Cyprinodontiformes). Biodiversity Genomes. https://doi.org/10.56179/001c.77448

Arcila, D., Rincon-Sandoval, M., Hanson, W., Hart, P. B., González, V. L., Betancur-R, R., & Bichuette, M. E. (2023). Transcriptomic analysis of the Brazilian blind characid, Stygichthys typhlops, reveals convergent selection with Astyanax mexicanus and other cavefishes. Frontiers in Ecology and Evolution, 11, 1076756. https://doi.org/10.3389/fevo.2023.1076756

Narváez Barandica, J. C., Quintero-Galvis, J. F., Caruso Vargas, A., Blanco Cervantes, G., Aguirre Pabón, J. C., Castro García, L., Betancur-R., R., & Acero P., A. (2023). Congruence between microsatellite loci, SNPs, and COI gene reveals a phylogeographic break in the southern Caribbean Sea: The case of West Indian top shell Cittarium pica (Gastropoda: Tegulidae). Fisheries Research, 269, 106857. https://doi.org/10.1016/j.fishres.2023.106857

Piñeros, V. J., Del R. Pedraza-Marrón, C., Betancourt-Resendes, I., Calderón-Cortés, N., Betancur-R, R., & Domínguez-Domínguez, O. (2022). Genome-wide species delimitation analyses of a silverside fish species complex in central Mexico indicate taxonomic over-splitting. BMC Ecology and Evolution, 22(1), 108. https://doi.org/10.1186/s12862-022-02063-0

de Brito, V., Betancur-R, R., Burns, M. D., Buser, T. J., Conway, K. W., Fontenelle, J. P., Kolmann, M. A., McCraney, W. T., Thacker, C. E., & Bloom, D. D. (2022). Patterns of Phenotypic Evolution Associated with Marine/Freshwater Transitions in Fishes. Integrative And Comparative Biology, 62(2), 406–423. https://doi.org/10.1093/icb/icac085

Peterson, R. D., Sullivan, J. P., Hopkins, C. D., Santaquiteria, A., Dillman, C. B., Pirro, S., Betancur-R, R., Arcila, D., Hughes, L. C., & Ortí, G. (2022). Phylogenomics of Bony-Tongue Fishes (Osteoglossomorpha) Shed Light on the Craniofacial Evolution and Biogeography of the Weakly Electric Clade (Mormyridae). Systematic Biology, 71(5), 1032–1044. https://doi.org/10.1093/sysbio/syac001

Troyer, E. M., Betancur-R, R., Hughes, L. C., Westneat, M., Carnevale, G., White, W. T., Pogonoski, J. J., Tyler, J. C., Baldwin, C. C., Ortí, G., Brinkworth, A., Clavel, J., & Arcila, D. (2022). The impact of paleoclimatic changes on body size evolution in marine fishes. Proceedings of the National Academy of Sciences of the United States of America, 119(29). https://doi.org/ARTN e2122486119 10.1073/pnas.2122486119

Medeiros, A. P. M., Santos, B. A., & Betancur‐R., R. (2022). Does genome size increase with water depth in marine fishes? Evolution, 76(7), 1578–1589. https://doi.org/10.1111/evo.14510

Marceniuk, A. P., Oliveira, C., Sales, J. B. L., & Betancur-R, R. (2022). The marine catfishes of the genus Bagre (Siluriformes; Ariidae) from the Western Atlantic. Marine Biodiversity, 52(1), 12. https://doi.org/10.1007/s12526-021-01238-0

Santaquiteria, A., Siqueira, A. C., Duarte-Ribeiro, E., Carnevale, G., White, W. T., Pogonoski, J. J., Baldwin, C. C., Ortí, G., Arcila, D., & Betancur-R, R. (2021). Phylogenomics and Historical Biogeography of Seahorses, Dragonets, Goatfishes, and Allies (Teleostei: Syngnatharia): Assessing Factors Driving Uncertainty in Biogeographic Inferences. Systematic Biology, 70(6), 1145–1162. https://doi.org/10.1093/sysbio/syab028

Arcila, D., Hughes, L. C., Meléndez-Vazquez, B., Baldwin, C. C., White, W. T., Carpenter, K. E., Williams, J. T., Santos, M. D., Pogonoski, J. J., Miya, M., Ortí, G., & Betancur-R, R. (2021). Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria). Systematic Biology, 70(6), 1123–1144. https://doi.org/10.1093/sysbio/syab018

Atta, C. J., Yuan, H., Li, C. H., Arcila, D., Betancur-R, R., Hughes, L. C., Ortí, G., & Tornabene, L. (2021). Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei). Molecular Phylogenetics and Evolution, 166. https://doi.org/https://doi.org/10.1016/j.ympev.2021.107315

Medeiros, A. P. M., Ferreira, B. P., Betancur‐R, R., Cardoso, A. P. L. R., Matos, M. R. S. B. C., & Santos, B. A. (2021). Centenary shipwrecks reveal the limits of artificial habitats in protecting regional reef fish diversity. Journal of Applied Ecology, 59(1), 286–299. https://doi.org/10.1111/1365-2664.14053

Medeiros, A. P. M., Ferreira, B. P., Alvarado, F., Betancur‐R, R., Soares, M. O., & Santos, B. A. (2021). Deep reefs are not refugium for shallow‐water fish communities in the southwestern Atlantic. Ecology and Evolution, 11(9), 4413–4427. https://doi.org/10.1002/ece3.7336

Rincon-Sandoval, M., Duarte-Ribeiro, E., Davis, A. M., Santaquiteria, A., Hughes, L. C., Baldwin, C. C., Soto-Torres, L., Acero, A., Walker, H. J., Carpenter, K. E., Sheaves, M., Orti, G., Arcila, D., & Betancur-R, R. (2020). Evolutionary determinism and convergence associated with water-column transitions in marine fishes. Proceedings of the National Academy of Sciences of the United States of America, 117(52), 33396–33403. https://doi.org/10.1073/pnas.2006511117

Hughes, L. C., Ortí, G., Saad, H., Li, C. H., White, W. T., Baldwin, C. C., Crandall, K. A., Arcila, D., & Betancur, R. (2020). Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics. Mol Ecol Resour, 21(3), 816–833. https://doi.org/10.1111/1755-0998.13287

Kolmann, M. A., Hughes, L. C., Hernandez, L. P., Arcila, D., Betancur-R, R., Sabaj, M. H., López-Fernández, H., & Ortí, G. (2020). Phylogenomics of Piranhas and Pacus (Serrasalmidae) Uncovers How Dietary Convergence and Parallelism Obfuscate Traditional Morphological Taxonomy. Systematic Biology, 70(3), 576–592. https://doi.org/10.1093/sysbio/syaa065

Davis, A. M., Pusey, B. J., & Betancur‐R, R. (2020). Effects of adoption of freshwater residency on life‐history ecology of terapontid grunters. Freshwater Biology, 65(6), 1139–1152. https://doi.org/10.1111/fwb.13499

Da Silva, R., Pedraza-Marrón, C. D. R., Sampaio, I., Betancur-R, R., Gomes, G., & Schneider, H. (2020). New insights about species delimitation in red snappers (Lutjanus purpureus and L. campechanus) using multilocus data. Molecular Phylogenetics and Evolution, 147, 106780. https://doi.org/10.1016/j.ympev.2020.106780

Hughes, L. C., Cardoso, Y. P., Sommer, J. A., Cifuentes, R., Cuello, M., Somoza, G. M., González‐Castro, M., Malabarba, L. R., Cussac, V., Habit, E. M., Betancur‐R., R., & Ortí, G. (2020). Biogeography, habitat transitions and hybridization in a radiation of South American silverside fishes revealed by mitochondrial and genomic RAD data. Molecular Ecology, 29(4), 738–751. https://doi.org/10.1111/mec.15350

Thomas, M., & Betancur-R, R. (2020). Ariidae. In M. L. Warren & B. M. Burr (Eds.), Freshwater fishes of North America (Vol. 2). The Johns Hopkins University Press.

Meléndez-Vazquez, F., Olmeda-Saldaña, M., Cruz, J., Arcila, D., & Betancur, R. (2019). Effects of Hurricane Maria in hamlet communities (Serranidae: spp.) in Puerto Rico. Ecological Indicators, 107. https://doi.org/ARTN 105591 10.1016/j.ecolind.2019.105591

Pedraza-Marrón, C. D. R., Silva, R., Deeds, J., Van Belleghem, S. M., Mastretta-Yanes, A., Domínguez-Domínguez, O., Rivero-Vega, R. A., Lutackas, L., Murie, D., Parkyn, D., Bullock, L. H., Foss, K., Ortiz-Zuazaga, H., Narváez-Barandica, J., Acero, A., Gomes, G., & Betancur-R, R. (2019). Genomics overrules mitochondrial DNA, siding with morphology on a controversial case of species delimitation. Proceedings of the Royal Society B: Biological Sciences, 286(1900), 20182924. https://doi.org/10.1098/rspb.2018.2924

Betancur-R, R., Arcila, D., Vari, R. P., Hughes, L. C., Oliveira, C., Sabaj, M. H., & Ortí, G. (2019). Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes. Evolution, 73(2), 329–345. https://doi.org/10.1111/evo.13649

Marceniuk, A. P., Marchena, J., Oliveira, C., & Betancur-R., R. (2019). Chinchaysuyoa, a new genus of the fish family Ariidae (Siluriformes), with a redescription of Chinchaysuyoa labiata from Ecuador and a new species description from Peru. Zootaxa, 4551(3). https://doi.org/10.11646/zootaxa.4551.3.5

Ascarrunz, E., Sánchez-Villagra, M. R., Betancur-R, R., & Laurin, M. (2019). On trends and patterns in macroevolution: Williston’s law and the branchiostegal series of extant and extinct osteichthyans. BMC Evolutionary Biology, 19(1), 117. https://doi.org/10.1186/s12862-019-1436-x

Rincon‐Sandoval, M., Betancur‐R, R., & Maldonado‐Ocampo, J. A. (2019). Comparative phylogeography of trans‐Andean freshwater fishes based on genome‐wide nuclear and mitochondrial markers. Molecular Ecology, 28(5), 1096–1115. https://doi.org/10.1111/mec.15036

Ribeiro, E., Davis, A. M., Rivero-Vega, R. A., Ortí, G., & Betancur-R, R. (2018). Post-Cretaceous bursts of evolution along the benthic-pelagic axis in marine fishes. Proceedings of the Royal Society B: Biological Sciences, 285(1893), 20182010. https://doi.org/10.1098/rspb.2018.2010

Rincón-Sandoval, M., Betancur-R, R., & Maldonado-Ocampo, J. A. (2018). Mitochondrial genomes of the headstanders Megaleporinus muyscorum (Steindachner 1900) and Megaleporinus obtusidens (Valenciennes 1837), (Characiformes, Anostomidae). Mitochondrial DNA Part B, 3(2), 634–636. https://doi.org/10.1080/23802359.2018.1473723

Hughes, L. C., Ortí, G., Huang, Y., Sun, Y., Baldwin, C. C., Thompson, A. W., Arcila, D., Betancur, R. R., Li, C., Becker, L., Bellora, N., Zhao, X., Li, X., Wang, M., Fang, C., Xie, B., Zhou, Z., Huang, H., Chen, S., … Shi, Q. (2018). Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proc Natl Acad Sci U S A, 115(24), 6249–6254. https://doi.org/10.1073/pnas.1719358115

Riera, R., Tuset, V. M., Betancur-R, R., Lombarte, A., Marcos, C., & Pérez-Ruzafa, A. (2018). Modelling alpha-diversities of coastal lagoon fish assemblages from the Mediterranean Sea. Progress in Oceanography, 165, 100–109. https://doi.org/10.1016/j.pocean.2018.05.003

Zhong, B., & Betancur-R, R. (2017). Expanded Taxonomic Sampling Coupled with Gene Genealogy Interrogation Provides Unambiguous Resolution for the Evolutionary Root of Angiosperms. Genome Biology and Evolution, 9(11), 3154–3161. https://doi.org/10.1093/gbe/evx233

Marceniuk, A. P., Acero, A. P., Cooke, R., & Betancur-R, R. (2017). Taxonomic revision of the New World genus Ariopsis Gill (Siluriformes: Ariidae), with description of two new species. Zootaxa, 4290(1). https://doi.org/10.11646/zootaxa.4290.1.1

Davis, A. M., & Betancur-R, R. (2017). Widespread ecomorphological convergence in multiple fish families spanning the marine–freshwater interface. Proceedings of the Royal Society B: Biological Sciences, 284(1854), 20170565. https://doi.org/10.1098/rspb.2017.0565

Arcila, D., Orti, G., Vari, R., Armbruster, J. W., Stiassny, M. L. J., Ko, K. D., Sabaj, M. H., Lundberg, J., Revell, L. J., & Betancur, R. (2017). Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life. Nature Ecology & Evolution, 1(2). https://doi.org/ARTN 0020 10.1038/s41559-016-0020

Betancur-R, R., Wiley, E. O., Arratia, G., Acero, A., Bailly, N., Miya, M., Lecointre, G., & Ortí, G. (2017). Phylogenetic classification of bony fishes. BMC Evolutionary Biology, 17(1), 162. https://doi.org/10.1186/s12862-017-0958-3

Hench, K., Mcmillan, W. O., Betancur‐R, R., & Puebla, O. (2017). Temporal changes in hamlet communities ( Hypoplectrus spp., Serranidae) over 17 years. Journal of Fish Biology, 91(5), 1475–1490. https://doi.org/10.1111/jfb.13481

Marceniuk, A. P., Marchena, J., & Betancur-R., R. (2016). Cathorops festae (Boulenger 1898) (Siluriformes; Ariidae), a valid species from Ecuador and Peru. Zootaxa, 4170(1). https://doi.org/10.11646/zootaxa.4170.1.7

Polanco F., A., Acero P., A., & Betancur‐R., R. (2016). No longer a circumtropical species: revision of the lizardfishes in the Trachinocephalus myops species complex, with description of a new species from the Marquesas Islands. Journal of Fish Biology, 89(2), 1302–1323. https://doi.org/10.1111/jfb.13038

Davis, A. M., Unmack, P. J., Vari, R. P., & Betancur-R., R. (2016). Herbivory Promotes Dental Disparification and Macroevolutionary Dynamics in Grunters (Teleostei: Terapontidae), a Freshwater Adaptive Radiation. The American Naturalist, 187(3), 320–333. https://doi.org/10.1086/684747

Sanciangco, M. D., Carpenter, K. E., & Betancur-R., R. (2016). Phylogenetic placement of enigmatic percomorph families (Teleostei: Percomorphaceae). Molecular Phylogenetics and Evolution, 94, 565–576. https://doi.org/10.1016/j.ympev.2015.10.006

Acero P., A., & Betancur-R, R. (2016). Ariidae. In K. E. Carpenter & N. De Angelis (Eds.), The living marine resources of the Eastern Central Atlantic (Vol. 3, pp. 1742–1750). Food and Agriculture Organization of the United Nations.

Correa, S. B., Betancur-R., R., Mérona, B. D., & Armbruster, J. W. (2015). Diet shift of Red Belly Pacu Piaractus brachypomus (Cuvier, 1818) (Characiformes: Serrasalmidae), a Neotropical fish, in the Sepik-Ramu River Basin, Papua New Guinea. Neotropical Ichthyology, 12(4), 827–833. https://doi.org/10.1590/1982-0224-20130212

Arcila, D., Pyron, R. A., Tyler, J. C., Ortí, G., & Betancur-R, R. (2015). An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae). Molecular Phylogenetics and Evolution, 82, 131–145. https://doi.org/10.1016/j.ympev.2014.10.011

Martinez, P. A., Zurano, J. P., Amado, T. F., Penone, C., Betancur-R, R., Bidau, C. J., & Jacobina, U. P. (2015). Chromosomal diversity in tropical reef fishes is related to body size and depth range. Molecular Phylogenetics and Evolution, 93, 1–4. https://doi.org/10.1016/j.ympev.2015.07.002

Betancur‐R, R., Ortí, G., & Pyron, R. A. (2015). Fossil‐based comparative analyses reveal ancient marine ancestry erased by extinction in ray‐finned fishes. Ecology Letters, 18(5), 441–450. https://doi.org/10.1111/ele.12423

Toledo-Hernandez, C., Velez-Zuazo, X., Ruiz-Diaz, C., Patricio, A., Mège, P., M, N., Sabat, A., Betancur-R, R., & Papa, R. (2014). Population ecology and genetics of the invasive lionfish in Puerto Rico. Aquatic Invasions, 9.

Betancur-R., R., Naylor, G. J. P., & Ortí, G. (2014). Conserved Genes, Sampling Error, and Phylogenomic Inference. Systematic Biology, 63(2), 257–262. https://doi.org/10.1093/sysbio/syt073